Index

_

__init__() (att.benchmarks.CouplingBenchmark method) (att.binding.BindingDetector method) (att.embedding.JointEmbedder method) (att.embedding.TakensEmbedder method) (att.neuro.EEGLoader method) (att.topology.PersistenceAnalyzer method) (att.transitions.TransitionDetector method)

A

aizawa_system() (in module att.synthetic) (in module att.synthetic.generators) att.benchmarks module att.benchmarks.methods module att.binding module att.cli module att.cli.main module att.config module att.config.experiment module att.config.seed module att.embedding module att.embedding.delay module att.embedding.dimension module

att.embedding.validation module att.neuro module att.neuro.eeg_params module att.neuro.embedding module att.surrogates module att.surrogates.core module att.synthetic module att.synthetic.generators module att.topology module att.transitions module att.viz module att.viz.plotting module

B

binding_features() (att.binding.BindingDetector method), [1] binding_image() (att.binding.BindingDetector method), [1]

binding_score() (att.binding.BindingDetector method), [1] BindingDetector (class in att.binding), [1]

C

confidence_interval() (att.binding.BindingDetector method), [1] coupled_lorenz() (in module att.synthetic) (in module att.synthetic.generators) coupled_oscillators() (in module att.synthetic) (in module att.synthetic.generators)

coupled_rossler_lorenz() (in module att.synthetic) (in module att.synthetic.generators) CouplingBenchmark (class in att.benchmarks), [1] crqa() (in module att.benchmarks) (in module att.benchmarks.methods)

D

detect_changepoints() (att.transitions.TransitionDetector method), [1]

distance() (att.topology.PersistenceAnalyzer method), [1]

E

EEGLoader (class in att.neuro), [1] embed_channel() (in module att.neuro) (in module att.neuro.embedding) embedding_quality() (att.binding.BindingDetector method), [1] EmbeddingDegeneracyWarning, [1] (class in att.embedding.validation)

ensemble_scores (att.binding.BindingDetector property), [1] estimate_delay() (in module att.embedding) (in module att.embedding.delay) estimate_dimension() (in module att.embedding) (in module att.embedding.dimension) export_to_json() (in module att.viz) (in module att.viz.plotting)

F

fit() (att.binding.BindingDetector method), [1] (att.embedding.JointEmbedder method), [1] (att.embedding.TakensEmbedder method), [1]

fit_transform() (att.embedding.JointEmbedder method), [1] (att.embedding.TakensEmbedder method), [1] (att.topology.PersistenceAnalyzer method), [1] (att.transitions.TransitionDetector method), [1]

G

get_channel_groups() (att.neuro.EEGLoader static method), [1] get_events() (att.neuro.EEGLoader method), [1] get_fallback_params() (att.neuro.EEGLoader static method), [1] (in module att.neuro) (in module att.neuro.eeg_params)

get_rng() (in module att.config) (in module att.config.seed) get_seed() (in module att.config.seed) get_sfreq() (att.neuro.EEGLoader method), [1]

J

JointEmbedder (class in att.embedding), [1]

K

kuramoto_oscillators() (in module att.synthetic) (in module att.synthetic.generators)

L

load() (att.neuro.EEGLoader method), [1] load_config() (in module att.config) (in module att.config.experiment)

load_from_json() (in module att.viz) (in module att.viz.plotting) lorenz_system() (in module att.synthetic) (in module att.synthetic.generators)

M

main() (in module att.cli) (in module att.cli.main) module att.benchmarks att.benchmarks.methods att.binding att.cli att.cli.main att.config att.config.experiment att.config.seed att.embedding att.embedding.delay att.embedding.dimension att.embedding.validation att.neuro att.neuro.eeg_params att.neuro.embedding att.surrogates att.surrogates.core att.synthetic att.synthetic.generators att.topology att.transitions att.viz att.viz.plotting

P

pac() (in module att.benchmarks) (in module att.benchmarks.methods) PersistenceAnalyzer (class in att.topology), [1] phase_randomize() (in module att.surrogates) (in module att.surrogates.core) plot() (att.topology.PersistenceAnalyzer method), [1] plot_attractor_3d() (in module att.viz) (in module att.viz.plotting) plot_barcode() (in module att.viz) (in module att.viz.plotting) plot_benchmark_sweep() (in module att.viz) (in module att.viz.plotting) plot_betti_curve() (in module att.viz) (in module att.viz.plotting) plot_binding_comparison() (in module att.viz) (in module att.viz.plotting)

plot_binding_image() (att.binding.BindingDetector method), [1] (in module att.viz) (in module att.viz.plotting) plot_comparison() (att.binding.BindingDetector method), [1] plot_persistence_diagram() (in module att.viz) (in module att.viz.plotting) plot_persistence_image() (in module att.viz) (in module att.viz.plotting) plot_surrogate_distribution() (in module att.viz) (in module att.viz.plotting) plot_timeline() (att.transitions.TransitionDetector method), [1] plot_transition_timeline() (in module att.viz) (in module att.viz.plotting) preprocess() (att.neuro.EEGLoader method), [1]

R

register_method() (att.benchmarks.CouplingBenchmark method), [1] rossler_system() (in module att.synthetic) (in module att.synthetic.generators)

run() (att.benchmarks.CouplingBenchmark method), [1]

S

save_config() (in module att.config) (in module att.config.experiment) set_seed() (in module att.config) (in module att.config.seed)

svd_embedding() (in module att.embedding) (in module att.embedding.validation) sweep() (att.benchmarks.CouplingBenchmark method), [1] switching_rossler() (in module att.synthetic) (in module att.synthetic.generators)

T

TakensEmbedder (class in att.embedding), [1] test_significance() (att.binding.BindingDetector method), [1] time_shuffle() (in module att.surrogates) (in module att.surrogates.core) to_image() (att.topology.PersistenceAnalyzer method), [1] to_landscape() (att.topology.PersistenceAnalyzer method), [1] to_timeseries() (att.neuro.EEGLoader method), [1]

transfer_entropy() (in module att.benchmarks) (in module att.benchmarks.methods) transform() (att.embedding.JointEmbedder method), [1] (att.embedding.TakensEmbedder method), [1] transform_marginals() (att.embedding.JointEmbedder method), [1] TransitionDetector (class in att.transitions), [1] twin_surrogate() (in module att.surrogates) (in module att.surrogates.core)

V

validate_embedding() (in module att.embedding) (in module att.embedding.validation)